Featured Publications

Mikhail Karasikov, Harun Mustafa, Gunnar Rätsch, André Kahles (2021). Lossless Indexing with Counting de Bruijn Graphs. In RECOMB 2022.

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Daniel Danciu, Mikhail Karasikov, Harun Mustafa, André Kahles, Gunnar Rätsch (2021). Topology-based Sparsification of Graph Annotations. In ISMB/ECCB 2021.

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Mikhail Karasikov, Harun Mustafa, Daniel Danciu, Marc Zimmermann, Christopher Barber, Gunnar Rätsch, André Kahles (2020). MetaGraph: Indexing and Analysing Nucleotide Archives at Petabase-scale. In bioRxiv.

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Mikhail Karasikov, Guillaume Pagès, Sergei Grudinin (2018). Smooth Orientation-Dependent Scoring Function for Coarse-Grained Protein Quality Assessment. In Bioinformatics.

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Mikhail Karasikov, Harun Mustafa, Amir Joudaki, Sara Javadzadeh No, Gunnar Rätsch, André Kahles (2018). Sparse Binary Relation Representations for Genome Graph Annotation. In RECOMB 2019.

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